SA or SD for building the reference

[hshcao]

Hi there,
I am building the augmented reference for identifying transposition activity in a bacterial genome using RNAseq data. I have the locations and sequences of the transposons in the host genome (name, start, end, strand, length), not sure what the SA and SD are available.
[2019-07-07 22:44:04] Copying transposon files
here are the err mesage I got:
Traceback (most recent call last):
File "/home/hcao/miniconda2/envs/imfusion/bin/imfusion-build", line 11, in
load_entry_point('imfusion==0.3.2', 'console_scripts', 'imfusion-build')()
File "/home/hcao/miniconda2/envs/imfusion/lib/python3.6/site-packages/imfusion/main/build.py", line 35, in main
output_dir=args.output_dir)
File "/home/hcao/miniconda2/envs/imfusion/lib/python3.6/site-packages/imfusion/build/indexers/base.py", line 161, in build
build_util.check_feature_file(transposon_features_path)
File "/home/hcao/miniconda2/envs/imfusion/lib/python3.6/site-packages/imfusion/build/util.py", line 239, in check_feature_file
raise ValueError('No valid features (with type = SD or SA)'
ValueError: No valid features (with type = SD or SA)were found in the transposon feature file.

is there anyway to build the reference without the SA or SD type information?

Thanks,

HC