Yggdrasil/pyproject.toml at main · AImageLab-zip/Yggdrasil · GitHub

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# Lint configuration only — this repo is not a pip-installable package.
[tool.ruff]
target-version = "py311"
extend-exclude = [
    "staticfiles",
    "logs",
    "scripts",
    "*/migrations/*",
]

[tool.ruff.lint]
# Permissive baseline on purpose: syntax errors, undefined names and unused
# imports, plus the bandit-derived security rules ("S").
# The codebase mixes tabs/spaces and predates any formatter — no style
# enforcement here. Widen one rule at a time, each with its cleanup.
select = ["E9", "F63", "F7", "F82", "F401", "S"]
# S110/S112 (try-except-pass/continue) are a pervasive legacy pattern here,
# not a security signal; auditing them is style work, not release work.
ignore = ["S110", "S112"]

[tool.ruff.lint.per-file-ignores]
# Tests use asserts and throwaway credentials by design.
"**/tests*.py" = ["S101", "S105", "S106"]
# CLI-only admin command; db/table names come from argv + a fixed allowlist,
# never from web input.
"common/management/commands/import_legacy_prod.py" = ["S608"]
# subprocess/urlopen with arguments built from settings and job records,
# never from request data. No shell=True anywhere.
"common/tasks.py" = ["S603", "S607"]
"common/export_processing.py" = ["S603", "S607"]
# ffprobe call: argv is a fixed list plus a local path this process just wrote or
# downloaded; no shell=True.
"laparoscopy/video_probe.py" = ["S603"]

# Import direction (CLAUDE.md, docs/architecture.md): domain apps -> annotations ->
# common, and domain apps do not import each other. Checked in CI by `lint-imports`.
[tool.importlinter]
root_packages = ["common", "annotations", "maxillo", "brain", "laparoscopy", "urology", "cardiology"]

[[tool.importlinter.contracts]]
id = "layers"
name = "Domain apps -> annotations -> common"
type = "layers"
layers = ["maxillo : brain : laparoscopy : urology : cardiology", "annotations", "common"]
ignore_imports = [
    # Existing violations, listed so that only NEW ones fail CI. Remove a line when
    # its import is fixed; never add one without a maintainer's sign-off.
    # -- application code
    "annotations.management.commands.annotations_crosscheck -> brain.models",
    "annotations.views -> maxillo.ios_meshes",
    "common.admin -> annotations.models",
    "common.annotation_lock -> annotations.models",
    "common.annotation_lock -> maxillo.models",
    "common.deletion -> annotations.models",
    "common.domain_views.export -> annotations.queries",
    "common.domain_views.export -> maxillo.models",
    "common.export_catalog -> annotations.queries",
    "common.export_processing -> annotations.services.ios_landmarks",
    "common.export_processing -> annotations.services.segmentation",
    "common.export_processing -> maxillo.models",
    "common.management.commands.seed_dev -> brain.models",
    "common.management.commands.seed_dev -> laparoscopy.models",
    "common.management.commands.seed_dev -> maxillo.models",
    "common.management.commands.seed_dev -> urology.models",
    "laparoscopy.file_utils -> maxillo.file_utils",
    "maxillo.file_utils -> laparoscopy.video_probe",
    "maxillo.views.domain -> laparoscopy.forms",
    "maxillo.views.patient_upload -> laparoscopy.file_utils",
    "annotations.management.commands.annotations_convert_legacy -> brain.models",
    "annotations.management.commands.annotations_convert_legacy -> maxillo.models",
    "annotations.management.commands.annotations_crosscheck -> laparoscopy.models",
    "annotations.management.commands.annotations_crosscheck -> maxillo.models",
    "annotations.management.commands.annotations_convert_legacy -> laparoscopy.models",
    # -- tests (fixtures that build rows in several apps)
    "annotations.tests_apply -> maxillo.models",
    "annotations.tests_commands -> laparoscopy.models",
    "annotations.tests_commands -> maxillo.models",
    "annotations.tests_ios_landmarks -> maxillo.file_utils",
    "annotations.tests_ios_landmarks -> maxillo.models",
    "annotations.tests_model_constraints -> maxillo.models",
    "annotations.tests_multi_target -> maxillo.models",
    "annotations.tests_panoramic -> maxillo.models",
    "annotations.tests_roi_stats_command -> maxillo.models",
    "annotations.tests_serializers -> maxillo.models",
    "annotations.tests_services -> maxillo.models",
    "annotations.tests_tooth_segmentation -> maxillo.models",
    "annotations.tests_views_measurements -> maxillo.models",
    "common.tests -> brain.models",
    "common.tests -> laparoscopy.models",
    "common.tests -> maxillo.models",
    "common.tests -> urology.models",
    "common.tests_admin_domain_scope -> brain.admin",
    "common.tests_admin_domain_scope -> brain.models",
    "common.tests_admin_domain_scope -> laparoscopy.admin",
    "common.tests_admin_domain_scope -> laparoscopy.models",
    "common.tests_admin_domain_scope -> maxillo.admin",
    "common.tests_admin_domain_scope -> maxillo.models",
    "common.tests_admin_queries -> annotations.models",
    "common.tests_admin_queries -> laparoscopy.models",
    "common.tests_admin_queries -> maxillo.admin",
    "common.tests_admin_queries -> maxillo.models",
    "common.tests_export_prefix -> maxillo.file_utils",
    "common.tests_export_prefix -> maxillo.models",
    "common.tests_file_response_safety -> maxillo.file_utils",
    "common.tests_file_response_safety -> maxillo.models",
    "common.tests_file_serve_acl -> brain.models",
    "common.tests_file_serve_acl -> laparoscopy.models",
    "common.tests_file_serve_acl -> maxillo.models",
    "common.tests_file_serve_bundle -> brain.models",
    "common.tests_file_serve_bundle -> maxillo.models",
    "common.tests_folder_deletion -> maxillo.models",
    "common.tests_live_transcription -> maxillo.models",
    "common.tests_modality_config -> brain.models",
    "common.tests_modality_config -> maxillo.models",
    "common.tests_project_admin_lifecycle -> annotations.models",
    "common.tests_project_admin_lifecycle -> maxillo.admin",
    "common.tests_project_admin_lifecycle -> maxillo.models",
    "common.tests_raw_data_lock -> annotations.models",
    "common.tests_raw_data_lock -> brain.models",
    "common.tests_raw_data_lock -> laparoscopy.admin",
    "common.tests_raw_data_lock -> laparoscopy.models",
    "common.tests_raw_data_lock -> maxillo.models",
    "common.tests_runner -> maxillo.runner_api_service",
    "common.tests_share_links -> maxillo.models",
    "maxillo.tests_export_share -> laparoscopy.models",
]

[[tool.importlinter.contracts]]
id = "domains-independent"
name = "Domain apps do not import each other"
type = "independence"
modules = ["maxillo", "brain", "laparoscopy", "urology"]
ignore_imports = [
    # Existing violations, listed so that only NEW ones fail CI. Remove a line when
    # its import is fixed; never add one without a maintainer's sign-off.
    # -- application code
    "annotations.management.commands.annotations_crosscheck -> brain.models",
    "annotations.views -> maxillo.ios_meshes",
    "common.admin -> annotations.models",
    "common.annotation_lock -> annotations.models",
    "common.annotation_lock -> maxillo.models",
    "common.deletion -> annotations.models",
    "common.domain_views.export -> annotations.queries",
    "common.domain_views.export -> maxillo.models",
    "common.export_catalog -> annotations.queries",
    "common.export_processing -> annotations.services.ios_landmarks",
    "common.export_processing -> annotations.services.segmentation",
    "common.export_processing -> maxillo.models",
    "common.management.commands.seed_dev -> brain.models",
    "common.management.commands.seed_dev -> laparoscopy.models",
    "common.management.commands.seed_dev -> maxillo.models",
    "common.management.commands.seed_dev -> urology.models",
    "laparoscopy.file_utils -> maxillo.file_utils",
    "maxillo.file_utils -> laparoscopy.video_probe",
    "maxillo.views.domain -> laparoscopy.forms",
    "maxillo.views.patient_upload -> laparoscopy.file_utils",
    "annotations.management.commands.annotations_convert_legacy -> brain.models",
    "annotations.management.commands.annotations_convert_legacy -> maxillo.models",
    "annotations.management.commands.annotations_crosscheck -> laparoscopy.models",
    "annotations.management.commands.annotations_crosscheck -> maxillo.models",
    "annotations.management.commands.annotations_convert_legacy -> laparoscopy.models",
    # -- tests (fixtures that build rows in several apps)
    "annotations.tests_apply -> maxillo.models",
    "annotations.tests_commands -> laparoscopy.models",
    "annotations.tests_commands -> maxillo.models",
    "annotations.tests_ios_landmarks -> maxillo.file_utils",
    "annotations.tests_ios_landmarks -> maxillo.models",
    "annotations.tests_model_constraints -> maxillo.models",
    "annotations.tests_multi_target -> maxillo.models",
    "annotations.tests_panoramic -> maxillo.models",
    "annotations.tests_roi_stats_command -> maxillo.models",
    "annotations.tests_serializers -> maxillo.models",
    "annotations.tests_services -> maxillo.models",
    "annotations.tests_tooth_segmentation -> maxillo.models",
    "annotations.tests_views_measurements -> maxillo.models",
    "common.tests -> brain.models",
    "common.tests -> laparoscopy.models",
    "common.tests -> maxillo.models",
    "common.tests -> urology.models",
    "common.tests_admin_domain_scope -> brain.admin",
    "common.tests_admin_domain_scope -> brain.models",
    "common.tests_admin_domain_scope -> laparoscopy.admin",
    "common.tests_admin_domain_scope -> laparoscopy.models",
    "common.tests_admin_domain_scope -> maxillo.admin",
    "common.tests_admin_domain_scope -> maxillo.models",
    "common.tests_admin_queries -> annotations.models",
    "common.tests_admin_queries -> laparoscopy.models",
    "common.tests_admin_queries -> maxillo.admin",
    "common.tests_admin_queries -> maxillo.models",
    "common.tests_export_prefix -> maxillo.file_utils",
    "common.tests_export_prefix -> maxillo.models",
    "common.tests_file_response_safety -> maxillo.file_utils",
    "common.tests_file_response_safety -> maxillo.models",
    "common.tests_file_serve_acl -> brain.models",
    "common.tests_file_serve_acl -> laparoscopy.models",
    "common.tests_file_serve_acl -> maxillo.models",
    "common.tests_file_serve_bundle -> brain.models",
    "common.tests_file_serve_bundle -> maxillo.models",
    "common.tests_folder_deletion -> maxillo.models",
    "common.tests_live_transcription -> maxillo.models",
    "common.tests_modality_config -> brain.models",
    "common.tests_modality_config -> maxillo.models",
    "common.tests_project_admin_lifecycle -> annotations.models",
    "common.tests_project_admin_lifecycle -> maxillo.admin",
    "common.tests_project_admin_lifecycle -> maxillo.models",
    "common.tests_raw_data_lock -> annotations.models",
    "common.tests_raw_data_lock -> brain.models",
    "common.tests_raw_data_lock -> laparoscopy.admin",
    "common.tests_raw_data_lock -> laparoscopy.models",
    "common.tests_raw_data_lock -> maxillo.models",
    "common.tests_runner -> maxillo.runner_api_service",
    "common.tests_share_links -> maxillo.models",
    "maxillo.tests_export_share -> laparoscopy.models",
]